Hadlak, S, Tominski, C, Schulz, H, and Schumann, H (2010(to appear)).
Visualization of Hierarchies in Space and Time
In: GeoVA(t) - Geospatial Visual Analytics: Focus on Time. Wokshop. Guimaraes, Portugal, 10-11 May. Proceedings.

Kiselyov, A, Semenova, M, Chernyshova, N, Leitao, A, Samet, A, Kislyi, K, Raihstat, M, Oprea, T, Lemcke, H, Lantow, M, Weiss, D, Kuznetsov, S, and Semenov, V (2010(to appear)).
Novel Derivatives of 1,3,4-Oxadiazoles Are Potent Mitostatic Agents Featuring Strong Microtubule Depolymerizing Activity in the Sea Urchin Embryo and Cell Culture Assays.
European Journal of Medicinal Chemistry.

Ewald, R, Schulz, R, and Uhrmacher, AM (2010 (to appear)).
Selecting Simulation Algorithm Portfolios by Genetic Algorithms
In: Proceedings of the 24th Workshop on Principles of Advanced and Distributed Simulation (PADS 2010).

Haack, F, Leye, S, and Uhrmacher, AM (2010 (to appear)).
A Flexible Architecture for modeling and simulation of diffusional association
In: 3rd Workshop ''From Biology To Concurrency and back''.

Leye, S and Uhrmacher, AM (2010 (to appear)).
A Flexible and Extensible Architecture for Experimental Model Validation
In: 3rd International ICST Conference on Simulation Tools and Techniques.

Leye, S, John, M, and Uhrmacher, AM (2010 (to appear)).
A Flexible Architecture for Performance Experiments with the pi-Calculus and its Extensions
In: 3rd International ICST Conference on Simulation Tools and Techniques.

Ruddeck, G and Martens, A (2010 (to appear)).
Communication Patterns in Component-Based ITS
ICALT2010.

Ewald, R, Himmelspach, J, Jeschke, M, Leye, S, and Uhrmacher, AM (2010).
Flexible Experimentation in the Modeling and Simulation Framework JAMES II – Implications for Computational Systems Biology
Briefings in Bioinformatics.

Frahm, J, Mattsson, M, and Simkó, M (2010).
Exposure to ELF magnetic fields modulate redox related protein expression in mouse macrophages.
Toxicology Letters, 192(3):330-336.

Henkel, R and Waltemath, D (2010).
Searching the BioModels Database
Miscellaneous publication, Software Demonstration at the Integrative Bioinformatics 2010 Symposium, Cambridge (UK) .

John, M, Lhoussaine, C, Niehren, J, and Uhrmacher, A (2010).
The Attributed Pi-Calculus with Priorities
Transactions on Computational Systems Biology XII, 5945/2010:13-76.

Uhrmacher, AM, John, M, Mazemondet, O, Unger, A, Rharass, T, Bader, B, and Rolfs, A (2009 (to appear)).
Computer Science Meets Cell Biology - GRK dIEM oSiRiS
Universität Rostock.

Bader, BM and Weiss, DG (2009).
Nuclear beta-catenin import during differentiation of neural midbrain progenitor cells
Poster, Arolla, CH, EMBO Workshop: Wnt Signaling in Development and Disease.

Bader, BM, Arenas, E, and Weiss, DG (2009).
Quantitative image cytometry: nuclear beta-catenin shuttling during differentiation of human and mouse midbrain progenitor cells
In: Abstract book: "19th Annual Conference of the German Society for Cytometry", pp. 18, Leipzig, DGfZ.

Dalle, O, Ribault, J, and Himmelspach, J (2009).
Design considerations for m&s software
In: Proceedings of the Winter Simulation Conference, ed. by M. D. Rossetti and R. R. Hill and B. Johansson and A. Dunkin and R. G. Ingalls, pp. 944-955, IEEE Computer Science.

Ewald, R, Himmelspach, J, Jeschke, M, Leye, S, and Uhrmacher, AM (2009).
Performance Issues in Evaluating Models and Designing Simulation Algorithms
In: International Workshop on High Performance Computational Systems Biology, 2009. HIBI '09., pp. 71-80, IEEE CPS.

Ewald, R, Leye, S, and Uhrmacher, AM (2009).
An Efficient and Adaptive Mechanism for Parallel Simulation Replication
In: Proceedings of the 23rd ACM/IEEE/SCS Workshop on Principles of Advanced and Distributed Simulation (PADS 2009), pp. 104-113, IEEE Conference Publishing Services.

Ewald, R, Uhrmacher, A, and Saha, K (2009).
Data Mining for Simulation Algorithm Selection
In: Proceedings of the SIMUTools'09: 2nd International Conference on Simulation Tools and Techniques.

Frey, S, Wolkenhauer, O, and Millat, T (2009).
Quantifying properties of cell signaling cascades
In: Control Theory and Systems Biology, ed. by Pablo A. Iglesias and Brian Ingalls. MIT press, chap. 4, pp. 69-84.

Fröhlich, M, Jaeger, A, Weiss, DG, and Kriehuber, R (2009).
Specific inhibition of Bcl-2 leads to diminished neuronal differentiation in VM197 cells
Poster, Leipzig, 19th Annual Conference of the German Society for Cytometry (DGFZ).

Hadlak, S (2009).
Visualisierung von hierarchischen Strukturen auf einer Karte mit dem Point-Based Layout
Diplomarbeit, University of Rostock.

Henkel, R (2009).
Determining Model Similarities through Ranking Functions using the Example of Biological Computational Models
Diplomarbeit, Universtity of Rostock.

Henkel, R, Köhn, D, Peters, A, and Maus, C (2009).
Similarity Measures for Computational Biological Models
Poster, Manchester, UK, Data Integration in the Life Sciences, 6th International Workshop, DILS 2009.

Himmelspach, J (2009).
Toward a Collection of Principles, Techniques, and Elements of Modeling and Simulation Software
In: Proceedings of the SIMUL 2009, pp. 56-61, IEEE Computer Society.

Himmelspach, J and Uhrmacher, AM (2009).
What contributes to the quality of simulation results?
In: Proceedings of the 2009 INFORMS Simulation Society Research Workshop, ed. by L. H. Lee and M. E. Kuhl and J. W. Fowler and S. Robinson, pp. 125-129, INFORMS Simulation Society, University of Warwick, Coventry, U.K..