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Bibliography

References to publications, sorted by year and author.

Himmelspach, J, Ewald, R, Leye, S, and Uhrmacher, AM (2010).
Enhancing the Scalability of Simulations by Embracing Multiple Levels of Parallelization
In: Proceedings of the 2010 International Workshop on High Performance Computational Systems Biology, pp. 57-66, IEEE CPS.

Himmelspach, J, Röhl, M, and Uhrmacher, AM (2010).
Component-based models and simulation experiments for supporting valid multi-agent system simulations
Journal of Applied Artificial Intelligence, 24(5):414-442.

Hoffmann, E, Marion, S, Mishra, B, John, M, Kratzke, R, Ahmad, S, Holzer, D, Anand, P, Weiss, D, Griffiths, G, and Kuznetsov, S (2010).
Initial receptor-ligand interactions modulate gene expression and phagosomal properties during both early and late stages of phagocytosis
European Journal of Cell Biology, 89(9):693-704.

Holzhüter, C, Hadlak, S, and Schumann, H (2010).
Multi-Level Visualization for the Exploration of Temporal Trends in Simulation Data
Poster, Baltimore, Maryland, USA, Winter Simulation Conference 2010.

Holzhüter, C, Schulz, H, and Schumann, H (2010).
Enriched Heatmaps for Visualizing Uncertainty in Microarray Data
Poster, Leipzig, Germany, Eurographics Workshop on Visual Computing for Biology and Medicine 2010.

Hübner, R (2010).
Role of Wnt signaling in proliferation and differentiation of human neural progenitor cells (ReNcell VM)
PhD thesis, Universität Rostock.

Hübner, R, Schmöle, A, Liedmann, A, Frech, MJ, Rolfs, A, and Luo, J (2010).
Differentiation of human neural progenitor cells regulated by Wnt-3a.
Biochem Biophys Res Commun, 400(3):358-362.

Hübner, R, Schmöle, A, Liedmann, A, Frech, MJ, Rolfs, A, and Luo, J (2010).
Differentiation of human neural progenitor cells regulated by Wnt-3a
Poster, .

Jaeger, A (2010).
Charakterisierung von Apoptoseprozessen während der Differenzierung von humanen neuralen VM197-Progenitorzellen in vitro
PhD thesis, Universität Rostock, Rostock.

John, M, Lhoussaine, C, Niehren, J, and Uhrmacher, A (2010).
The Attributed Pi-Calculus with Priorities
Transactions on Computational Systems Biology XII, 5945/2010:13-76.

Juty, N, Le Novère, N, Waltemath, D, and Knüpfer, C (2010).
Ontologies for use in Systems Biology: SBO, KiSAO and TEDDY
Poster, , International Conference on Systems Biology (ICSB) 2010.

Karapetyan, G, Schmöle, A, Brennführer, A, Jaster, R, Pews-Davtyan, A, Ortinau, S, Rolfs, A, Frech, MJ, and Beller, M (2010).
The Synthesis of Novel Indolylmaleimides and The Biological Activity as GSK-3β Inhibitors in Human Neural Progenitor Cells
Poster, .

Kiselyov, A, Semenova, M, Chernyshova, N, Leitao, A, Samet, A, Kislyi, K, Raihstat, M, Oprea, T, Lemcke, H, Lantow, M, Weiss, D, Kuznetsov, S, and Semenov, V (2010).
Novel Derivatives of 1,3,4-Oxadiazoles Are Potent Mitostatic Agents Featuring Strong Microtubule Depolymerizing Activity in the Sea Urchin Embryo and Cell Culture Assays.
European Journal of Medicinal Chemistry, 45(5):1683-1697.

Lange, C, Mix, E, Frahm, J, Glass, Ã, Müller, J, Schmidt, O, Schmöle, A, Klemm, K, ortinau, S, Hübner, R, Frech, MJ, Wree, A, and Rolfs, A (2010).
Small molecule GSK-3 inhibitors increase neurogenesis in human neural progenitor cells
Neuroscience Letters.

Lantow, M, Rharass, T, Markhoff, J, Mihoc, C, Weiss, DG, and Burkel, E (2010).
Biocompatibility Tests on Quasicrystal-Ultrahigh Molecular Weight Polyethylene (UHMWPE) Composites in Human MG63 Osteoblast-Like Cell Cultures
Poster, Münster, Germany, Nanobio-Europe.

Leye, S and Uhrmacher, AM (2010).
A Flexible and Extensible Architecture for Experimental Model Validation
In: 3rd International ICST Conference on Simulation Tools and Techniques, ICST, Malaga, Spain, ICST/IEEE.

Leye, S, John, M, and Uhrmacher, AM (2010).
A Flexible Architecture for Performance Experiments with the pi-Calculus and its Extensions
In: 3rd International ICST Conference on Simulation Tools and Techniques, ICST, Malaga, Spain, ICST/IEEE.

Maciuszek, D and Martens, A (2010).
Computer-Rollenspiele als didaktikübergreifendes Lernspiel-Genre
In: Spielend lernen - Tagungsband der Abschlusskonferenz des Verbundprojektes Alphabit in Zusammenarbeit mit dem 4. Workshop Game-based Learning, ed. by Holger Diener, Dennis Maciuszek, Steffen Malo, Alke Martens, Bodo Urban, pp. 43-57, Stuttgart, Fraunhofer-Verlag.

Maciuszek, D and Martens, A (2010).
Patterns for the design of educational games
In: Educational Games: Design, Learning and Applications, ed. by Frej Edvardsen and Halsten Kulle, chap. 8, pp. 263-279, Nova, Hauppauge, NY.

Maciuszek, D, Géraldine, R, and Alke, M (2010).
Component-based development of educational games: The case of the user interface
In: Proceedings of the 4th European Conference on Games-Based Learning.

Maciuszek, D, Ruddeck, G, and Martens, A (2010).
Component-based development of educational games: The case of the user interface
In: Proceedings of the 4th European Conference on Games-Based Learning (ECGBL 2010), ed. by Bente Meyer, pp. 208-217, Reading, UK, Academic Publishing.

Maus, C, John, M, Rybacki, S, and Uhrmacher, AM (2010).
Towards Rule-Based Multi-Level Modeling
Poster, Edinburgh, UK, 11th International Conference on Systems Biology (ICSB).

Millat, T, Frey, S, and Wolkenhauer, O (2010).
How integrals over dynamic signals can unravel characteristic properties of signal transduction pathway
Poster, Edinburgh, UK, 11th International Conference on Systems Biology.

Pews-Davtyan, A, Tillack, A, Schmöle, A, Ortinau, S, Frech, MJ, Rolfs, A, and Beller, M (2010).
A new facile synthesis of 3-amidoindole derivatives and their evaluation as potential GSK-3beta inhibitors
Organic & Biomolecular Chemistry, 8(5):1149–1153.

Rharass, T, Lantow, M, Lemcke, H, Bader, BM, Redlich, B, Kuznetsov, SA, and Weiss, DG (2010).
The Involvement of Reactive Oxygen Species (ROS) in the Regulation of Wnt Signaling Pathways
Poster, Stockholm, Sweden, WNT Signaling in Physiology and Disease (WNT2010).

 

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