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Subproject: U2 - Efficient and flexible simulators for cell biological systems

created by Sigrun Hoffmann — last modified 2010-11-10 15:19

Research project context: »FSII - Simulation methods for regenerative systems«

	Efficient and flexible simulators for cell biological systems
Keywords: Simulation Algorithm, Exact computation, Approximative computation, Reaction networks, Efficient computation, Gillespie, JAMES II

	Research Project Information			Subproject Information
Runtime: 2006-10-01 until 2011-04-01 Project coordination: Prof. Dr.-Ing. habil. Heidrun Schumann; Prof. Dr. rer. nat. habil. Adelinde M. Uhrmacher; Prof. Olaf Wolkenhauer, Ph.D.; Prof. Dr. rer. nat. Lars Schwabe; Prof. Dr. rer. nat. habil. Karsten Wolf Scientific staff: Dipl. Inf. Clemens Holzhüter; Dipl.-Inf. Steffen Hadlak; M.Sc Youwei Zheng; Dr. Ing. Marc Streit; Dipl.-Inf. Stefan Leye; M.Sc. Bioinf. Fiete Haack; Dipl.-Inf. Stefan Rybacki			Project runtime: 2007-02-01 until 2010-10-19 Scientific coordination: Prof. Dr. rer. nat. habil. Adelinde M. Uhrmacher Scientific staff: Dr.-Ing. Matthias Jeschke

Different simulators shall be developed and shall be combined in a component-based model. The starting point will be the realization of different Gillespie variants. Those shall be combined with continuous simulators. Thereby, more recent approaches that allow the execution of differential equation models based on discrete event approaches shall be considered as well. The goal is an efficient and flexible simulation system for cell biological systems.

Further information on this subproject in the WWW:

http://wwwmosi.informatik.uni-rostock.de/mosi/projects/efsim

News: Paper on rule-based multi-level modeling under top 3 of most viewed articles in BMC Systems Biology 2012-03-20; BMBF Junior Research Group: grant awarded for Dagmar Waltemath 2012-03-06; DFG grant awarded for Roland Ewald 2012-03-02; First Prize at the Second International Biomodellling Competition Dagstuhl 2011 2011-04-18; Simon Bartels berichtet im aktuellen Profile-Sonderheft von seinem Praktikum in Edinburgh 2011-04-18; More news…

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