publications2

This folder holds the following references to publications, sorted by year and author.

There are 65 references in this bibliography folder.

Hellwig, H, Jeschke, M, and Deussen, O (2008 (to appear)).
A Contact Pressure Model Based on Centroidal Voronoi Diagrams for Surfaces of Revolution
In: Proceedings of the 5th Annual International Symposium on Voronoi Diagrams in Science and Engineering (ISVD '08).

Himmelspach, J, Ewald, R, and Uhrmacher, AM (2008 (to appear)).
A flexible and scalable experimentation layer
In: Proceedings of the Winter Simulation Conference, ed. by S.J. Mason, R.R. Hill, L. Moench, O. Rose.

Jeschke, M and Ewald, R (2008 (to appear)).
Large-Scale Design Space Exploration of SSA
In: Computational Methods in Systems Biology, International Conference, CMSB 2008, Rostock, Germany, October 12-15, 2008, Proceedings.

Jeschke, M and Uhrmacher, AM (2008 (to appear)).
Multi-resolution Spatial Simulation For Molecular Crowding
In: Proceedings of the Winter Simulation Conference, ed. by S.J. Mason, R.R. Hill, L. Moench, O. Rose.

John, M (2008 (to appear)).
Die Modellierung von Raum und Struktur in molekularbiologischen Systemen
GI Lecture Notes in Informatics.

John, M (2008 (to appear)).
Die Modellierung von Raum und Struktur in molekularbiologischen Systemen
In: GI Lecture Notes in Informatics. .

John, M, Tominski, C, and Schumann, H (2008 (to appear)).
Visual and analytical extensions for the table lens
In: Proceedings of the Conference on Electronic Imaging '08.

Leye, S, Himmelspach, J, Jeschke, M, Ewald, R, and Uhrmacher, AM (2008 (to appear)).
A grid-inspired mechanism for coarse-grained experiment execution
In: Proceedings of the 12th IEEE International Symposium on Distributed Simulation and Real-Time Applications.

Leye, S, Priami, C, and Uhrmacher, AM (2008 (to appear)).
A bounded-optimistic, parallel Beta-binders Simulator
In: Proceedings of the 12th IEEE International Symposium on Distributed Simulation and Real-Time Applications.

Maus, C (2008 (to appear)).
Component-based Modelling of RNA Structure Folding
In: Computational Methods in Systems Biology, International Conference, CMSB 2008, Rostock, Germany, October 12-15, 2008, Proceedings.

Bader, B and Weiss, D (2008).
A study of protein translocation during differentiation of human neural progenitor cells: Quantitative data generation from confocal 3D images for a systems biology approach
Poster, Budapest, Hungary, Proceedings of ISAC XXIV International Congress 2008 - Cytometry in the Age of Systems Biology - (International Society for the Advancement of Cytometry).

Bader, BM and Weiss, DG (2008).
Signal protein translocation in differentiating human neural progenitor cells: 3D image quantification for a systems biology approach
In: Proceedings of Annual Meeting of German Society for Cytometry 2008, Bremen, DGfZ.

Bader, BM, Mazemondet, O, Hübner, R, Redlich, B, Mix, E, Rolfs, A, and Weiss, DG (2008).
Beta-catenin translocation influences early differentiation of human neural progenitor cells
Poster, Keystone, CO, USA, Proceedings of Keystone Symposium on Wnt/beta-Catenin Signaling in Development and Disease.

Bader, BM, Redlich, B, and Weiss, DG (2008).
Quantitative 3D analysis and evaluation of confocal images for the study of translocation of Wnt-signalling molecules in human neural progenitor cells
Poster, Marburg/Lahn, Germany, "German Society for Cell Biology - Annual Meeting 2008", published in European Journal of Cell Biology, Volume 87S1, Suppl. 58, p 18, ISSN 0171-9335..

Bader, BM, Schmitz, Y, Redlich, B, Rateitschak, K, Wolkenhauer, O, and Weiss, DG (2008).
Quantitative 3D image analysis to study the beta-catenin translocation during differentiation of human neural progenitor cells
Poster, Dresden, Proceedings of "2nd International Congress on Stem Cells and Tissue Formation" July 6-9.

Jaeger, A, Klum, S, Bader, BM, Weiss, DG, and Kriehuber, R (2008).
Expression profile of apoptosis-related genes during differentiation in the human neuronal progenitor cell line VM197
Poster, Marburg/Lahn, Germany, "German Society for Cell Biology - Annual Meeting 2008", March 12 to March 15, European Journal of Cell Biology, Volume 87S1, Suppl. 58, p 18, ISSN 0171-9335.

Jaeger, A, Klum, S, Weiss, DG, and Kriehuber, R (2008).
The differentiation of human neuronal progenitor cells is accompanied by apoptotic cell death – a protective role of Bcl-2?
Poster, Luxembourg, Luxembourg, Apoptosis World 2008 - From mechanisms to applications; Jan 23th to 26th, 2008.

Jeschke, M, Ewald, R, Park, A, Fujimoto, R, and Uhrmacher, AM (2008).
Parallel and Distributed Spatial Simulation of Chemical Reactions
In: Proceedings of the 22nd ACM/IEEE/SCS Workshop on Principles of Advanced and Distributed Simulation (PADS 2008).

Jeschke, M, Park, A, Ewald, R, Fujimoto, R, and Uhrmacher, AM (2008).
A Parallel and Distributed Discrete Event Approach for Spatial Cell-Biological Simulations
Performance Evaluation Review.

John, M, Ewald, R, and Uhrmacher, AM (2008).
A Spatial Extension to the Pi Calculus
In: Electronic Notes in Theoretical Computer Science.

Köhn, D (2008).
MIASE - Toward the repetition of simulation runs
Miscellaneous publication, EBI, Compneur Group Meeting, Work report Marie Curie Fellowship.

Köhn, D and Le Novere, N (2008).
SED-ML - An XML Format for the Implementation of the MIASE Guidelines
In: CMSB 2008, LNBI 5307, ed. by M. Heiner and A.M. Uhrmacher, Springer-Verlag Berlin Heidelberg.

Köhn, D and Le Novère, N (2008).
The KInetic Simulation Algorithm Ontology (KiSAO) - A Proposal for the Classification of Simulation Algorithms in Systems Biology
Miscellaneous publication, Invited Talk, Super-Hackathon, Okinawa, Japan.

Köhn, D and Le Novère, N (2008).
Minimum Information About a Simulation Experiment (MIASE) - Toward the Repetition of Simulation Runs
Miscellaneous publication, Invited Talk, Super-Hackathon, Okinawa, Japan.

Köhn, D and Strömbäck, L (2008).
A Method for Semi-Automatic Integration of Standards in Systems Biology
In: 19th International Conference on Database and Expert Systems Aplications (DEXA) 2008, vol. 5181(0745), pp. 745-52, Lecture Notes in Computer Science, Springer.