Personal tools
You are here: Home Projects Finalized projects
Document Actions

Finalized projects

Up one level

Research Projects


FSI (2006-10-01 - 2011-04-01)
FSI - Modelling methods for regenerative systems

Subprojects

U_K_1 - Definition and realization of a platform for the composition of simulation models (2006-10-01 - 2008-06-01)
Definition and realization of a platform for the composition of simulation models
Scientific staff: Dr.-Ing. Mathias Röhl

Keywords: model components, composability, composition, reuse, COMO, JAMES II

H3_1 Distributed information retrieval using web based nets (2009-12-01 - 2011-11-30)
H3_1 Distributed information retrieval using web based nets
Scientific coordination: Prof. Dr. rer. nat. habil. Andreas Heuer
Scientific staff: Dipl.-Inf. Ron Henkel

Uhrm_A1 - Multi-level modeling of cell-biological systems (2009-10-15 - 2011-10-14)
Uhrm_A1 - Multi-level modeling of cell-biological systems
Scientific staff: Dipl. Biol. Carsten Maus

Keywords: ML-DEVS, Rule based model, Multi level model, JAMES II

M1 - e-Learning modeling and simulation for biologists (2009-03-01 - 2011-04-01)
M1 - e-Learning modeling and simulation for biologists
Scientific coordination: Prof. Dr.-Ing. Alke Martens
Scientific staff: Dipl.-Ing. Géraldine Ruddeck

U1 - Structure and space in modeling regenerative systems (2006-12-01 - 2010-08-26)
U1 - Structure and space in modeling regenerative systems
Scientific staff: Dr.-Ing. Mathias John

Keywords: Pi Calculus, Space Pi Calculus, Attributed Pi Calculus, Imperative Pi Calculus, Space, Structure, JAMES II

H1 - Defining and storing model components (2006-12-01 - 2010-11-30)
H1 - Defining and storing model components
Scientific coordination: Prof. Dr. rer. nat. habil. Andreas Heuer
Scientific staff: Dr.-Ing. Dagmar Waltemath

S1 - Visual Support for the Development of Methods and Models for Regenerative Systems (2007-02-01 - 2010-05-14)
S1 - Visual Support for the Development of Methods and Models for Regenerative Systems
Scientific coordination: Prof. Dr.-Ing. habil. Heidrun Schumann
Scientific staff: Dr.-Ing. Andrea Unger

S2 - Visual Data Mining of Complex Structures (2006-11-01 - 2010-06-09)
S2 - Visual Data Mining of Complex Structures
Scientific coordination: Prof. Dr.-Ing. habil. Heidrun Schumann
Scientific staff: Dr.-Ing. Hans-Jörg Schulz

Mart_K1 - Game-based Learning (2010-02-01 - 2011-12-01)
Game-based Learning
Scientific coordination: Prof. Dr.-Ing. Alke Martens

S_K_1 - Visual Data Mining visualization design for exploration of climate data (2006-10-01 - 2007-11-01)
Visual Data Mining visualization design for exploration of climate data
Scientific coordination: Prof. Dr.-Ing. habil. Heidrun Schumann
Scientific staff: Dr.-Ing. Thomas Nocke

Uhrm_A2 - Stochastic, Discrete Modelling of Cell Biological Processes in Continuous Space (2010-04-15 - 2012-03-31)
Stochastic, Discrete Modelling of Cell Biological Processes in Continuous and Hybrid Space
Scientific staff: Dipl.-Inf. Arne Bittig

Keywords: Stochastic Model, Discrete Model, Continuous Space, JAMES II

FSII (2006-10-01 - 2011-04-01)
FSII - Simulation methods for regenerative systems

Subprojects

Uhrm_K0 - Automatic algorithm selection for complex simulation problems (2006-12-01 - 2010-10-15)
Automatic algorithm selection for complex simulation problems
Scientific staff: Dr.-Ing. Roland Ewald

To select the most suitable simulation algorithm for a given task is often difficult. This is due to intricate interactions between model features, implementation details, and runtime environment, which may strongly affect the overall performance. An automated selection of simulation algorithms supports users in setting up simulation experiments, without demanding expert knowledge on simulation.

Schu_A1 - Visual support for validation and verification of models (2010-02-01 - 2012-01-01)
Visual support for validation and verification of models
Scientific coordination: Prof. Dr.-Ing. habil. Heidrun Schumann
Scientific staff: Dipl. Inf. Clemens Holzhüter

Schu_A2 - Multi-Level Visualization of Dynamic Complex Graphs (2010-01-01 - 2012-12-31)
Multi-Level Visualization of Dynamic Complex Graphs
Scientific coordination: Prof. Dr.-Ing. habil. Heidrun Schumann
Scientific staff: Dipl.-Inf. Steffen Hadlak

Uhrm_K1 - Integration of workflows in modeling and simulation (2009-10-01 - 2011-04-30)
Integration of workflows in modeling and simulation
Scientific staff: Dipl.-Inf. Stefan Rybacki

Keywords: Workflows, Reproducability, Reuse, JAMES II

Uhrm_K2 - Experimental Model Validation (2008-05-01 - 2012-04-01)
Experimental Model Validation
Scientific staff: Dipl.-Inf. Stefan Leye

Keywords: FAMVal, Validation, simulation-based model-checking, JAMES II

Schu_K1 - Visual Analytics of heterogeneuos data (2009-09-01 - 2010-12-01)
Visual Analytics of heterogeneuos data
Scientific coordination: Prof. Dr.-Ing. habil. Heidrun Schumann
Scientific staff: Dr. Ing. Marc Streit

U2 - Efficient and flexible simulators for cell biological systems (2007-02-01 - 2010-10-19)
Efficient and flexible simulators for cell biological systems
Scientific staff: Dr.-Ing. Matthias Jeschke

Keywords: Simulation Algorithm, Exact computation, Approximative computation, Reaction networks, Efficient computation, Gillespie, JAMES II

Schw_A1 - Multi-scale modeling and simulation of neural systems (2010-01-01 - 2012-12-31)
Multi-scale modeling and simulation of neural systems
Scientific coordination: Prof. Dr. rer. nat. Lars Schwabe
Scientific staff: M.Sc Youwei Zheng

Uhrm_K3 - Brownian-Dynamics-Simulation for cell biological applications (2009-08-01 - 2012-09-01)
Brownian-Dynamics-Simulation for cell biological applications
Scientific staff: M.Sc. Bioinf. Fiete Haack

Keywords: Brownian Dynamics, Cell Biology, JAMES II

FSIII (2006-10-01 - 2011-04-01)
Biological systems as regenerative systems

Subprojects

Weis_A1 The reorganization of the cytoskeleton during Wnt-mediated neuronal differentiation (2009-10-01 - 2011-09-01)
The reorganization of the cytoskeleton during Wnt-mediated neuronal differentiation
Scientific coordination: Prof. Dr. rer. nat. Dieter G. Weiss
Scientific staff: Dipl. Biol. Heiko Lemcke

Wolk_A1 - A systems biology approach to dynamic modelling of signalling pathways and their characterization through quantitative measures (2010-02-01 - 2011-01-01)
A systems biology approach to dynamic modelling of signalling pathways and their characterization through quantitative measures
Scientific coordination: Prof. Olaf Wolkenhauer, Ph.D.
Scientific staff: Dr.-Ing. Simone Frey

Wolk_K1 - Mathematical modelling of cellular signal transduction: kinetic properties of the Wnt-signalling pathway (2010-02-01 - 2012-01-01)
Mathematical modelling of cellular signal transduction: kinetic properties of the Wnt-signalling pathway
Scientific coordination: Prof. Olaf Wolkenhauer, Ph.D.
Scientific staff: Dipl.-Phys. Yvonne Schmitz

Rolf_K1 - in vitro and in silico exploration of the Wnt/beta-catenin signaling pathway during differentiation of human neural progenitor cells (2010-10-01 - 2012-09-01)
in vitro and in silico exploration of the Wnt/beta-catenin signaling pathway during differentiation of human neural progenitor cells titel of the thesis: Spatio-temporaSpatio-temporal Dynamics of the Wnt/beta-catenin Signaling Pathway: A Computational Systems Biology Approach
Scientific coordination: Prof. Dr. med. habil. Arndt Rolfs
Scientific staff: M.Sc. Orianne Mazemondet

Keywords: wet-lab experiments, immublotting, infra-red analysis, cell fractionation, in silico experiments, imperative pi, JAMES II

W1 - Wnt Signalling mediated changes in the cytoskeleton motor enzyme system: Active and passive role in the differentiation of neural progenitor cells (2006-10-01 - 2009-09-30)
W1 - Wnt Signalling mediated changes in the cytoskeleton motor enzyme system: Active and passive role in the differentiation of neural progenitor cells
Scientific coordination: Prof. Dr. rer. nat. Dieter G. Weiss
Scientific staff: Dr. rer. nat Benjamin M. Bader

Wo1 - The influence of spatial aspects and feedbacks on the dynamics of intercellular and intracellular signal transmission (2006-10-01 - 2009-09-30)
Wo1 - The influence of spatial aspects and feedbacks on the dynamics of intercellular and intracellular signal transmission
Scientific coordination: Prof. Olaf Wolkenhauer, Ph.D.
Scientific staff: Dipl.-Phys. Yvonne Schmitz

R2 - The Wnt dependent calcium signal path in the differentiation of human neural progenitor cells (2006-10-01 - 2009-09-30)
R2 - The Wnt dependent calcium signal path in the differentiation of human neural progenitor cells
Scientific coordination: Prof. Dr. med. habil. Arndt Rolfs
Scientific staff: Dr. rer. nat. Rayk Hübner

W2 - Interference of the canonical wnt pathway and apoptosis signaling pathways during proliferation and differentiation of neuronal progenitor cells (2006-10-01 - 2009-09-30)
Subproject: W2 - Interference of the canonical wnt pathway and apoptosis signaling pathways during proliferation and differentiation of neuronal progenitor cells
Scientific staff: Dr. rer. nat. Alexandra Jaeger

R1- Analysis of the functional impact of the canonical Wnt/Fz/Dsh/GSK-3ß/ß- Catenin- signalling pathways for the differentiation of human neural progenitor cells. (2006-10-01 - 2009-09-30)
R1- Analysis of the functional impact of the canonical Wnt/Fz/Dsh/GSK-3ß/ß- Catenin- signalling pathways for the differentiation of human neural progenitor cells.
Scientific coordination: Prof. Dr. med. habil. Arndt Rolfs
Scientific staff: M.Sc. Orianne Mazemondet

Rolf_A1 - Effects of Wnt/calcium-pathway on the differentiation of ReNcell VM cells (2010-03-01 - 2012-02-01)
Effects of Wnt/calcium-pathway on the differentiation of ReNcell VM cells
Scientific coordination: Prof. Dr. med. habil. Arndt Rolfs
Scientific staff: M.Sc. Ajay N. V. Talabattula

Weis_A2 - Spatio-temporal dynamics of transient protein-protein interaction on the level of receptor complexes and in the cytoplasm (2010-06-01 - 2011-07-01)
Spatio-temporal dynamics of transient protein-protein interaction on the level of receptor complexes and in the cytoplasm
Scientific coordination: Prof. Dr. rer. nat. Dieter G. Weiss
Scientific staff: M.Sc. Elke Carolin Calamia

Rolf_A2 - Effects of Wnt5a and Wnt7a on the differentiation of human, neural progenitor cells (2010-03-01 - 2012-03-01)
Effects of Wnt5a and Wnt7a on the differentiation of human, neural progenitor cells
Scientific coordination: Prof. Dr. med. habil. Arndt Rolfs
Scientific staff: M. Sc. Carolin Mahler

Rolf_K2 - Influence of novel indolylmaleimides on canonical Wnt signalling in human neural progenitor cells (2006-10-01 - 2011-04-01)
Influence of novel indolylmaleimides on canonical Wnt signalling in human neural progenitor cells
Scientific coordination: Prof. Dr. med. habil. Arndt Rolfs

FSIV (2006-10-01 - 2011-03-31)
X-topics which link the other research projects

Subprojects

Post Phd project III (2009-07-01 - 2011-03-31)
Study of cross-talk between canonical and non-canonical wnt signaling pathways
Scientific coordination: Prof. Dr. rer. nat. Dieter G. Weiss
Scientific staff: Dr. rer. nat. Tareck Rharass

Post Phd project IV (2010-08-01 - 2011-01-31)
Formal Description and Visual Representation of heterogeneous Information Landscapes
Scientific staff: Dr.-Ing. Hans-Jörg Schulz

Post Phd project I (2008-04-01 - 2010-05-01)
Developing Methods for Integrating Wet-Lab and Dry-Lab Experiments
Scientific staff: Dr.-Ing. Jan Himmelspach

Keywords: Experiment, Simulation, Study, Workflow, JAMES II, Optimization, Visualization

Post Phd project II (2006-10-01 - 2008-10-01)
Development and exploration of methods for an improved data base in particular regarding spatio-temporal processes in real time measurement for modelling and simulation
Scientific staff: Dr. rer. nat. Jana Frahm

Post Phd project V (2010-11-15 - 2011-03-31)
Experiment Design and Simulation Execution for Biologists
Scientific staff: Dr.-Ing. Roland Ewald

Keywords: Simulation Experiment, Experiment Design, Simulation Algorithm Selection, JAMES II, Model Validation, Workflow Support


Powered by Plone CMS, the Open Source Content Management System

This site conforms to the following standards: