Research Field: Modelling and Simulation Methods for Systems Biology
The emerging fields of computational biology and systems biology integrate concepts and ideas from biological sciences, engineering disciplines, mathematics, statistics, and computer science. The objective is to understand how gene regulation, molecular interactions, and cellular networks inter-operate, thus scaling up from molecular biology to systems biology. In this context modeling and simulation methods and tools play a central role.
Diverse modeling and simulation methods are being applied in the area
of systems biology. Most models in Systems Biology can easily be
located within the space that is spanned by three dimensions of
modeling: continuous and discrete; quantitative and qualitative;
stochastic and deterministic. These dimensions are not entirely
independent nor are they exclusive. Many modeling approaches are
hybrid as they combine continuous and discrete, quantitative and
qualitative, stochastic and deterministic aspects. Another important
aspect for the distinction of modeling approaches is at which level a
model describes a system: is it at the ``macro'' level, at the
``micro'' level, or at multiple levels of abstractions. Many challenges for modelling and simulation methods arise from this muli-level and multi-formalism modeling and simulation.
Related Research Projects:
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DiErMoSiS - Discrete event-oriented multi-level modeling and simulation in systems biology |
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Project coordination:
Adelinde M. Uhrmacher
Contractor(s):
DFG
The project is aimed at the development of modeling and simulation methods taking the specific challenges of Systems Biology into account and that support a description and analysis at different levels of detail. Therefore, concrete models shall be generated. Thus, the project combines research on modeling and simulation methodology and research on generating cellular models. |
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DELMS - Discrete event life science modelling and simulation |
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Project coordination:
Adelinde M. Uhrmacher
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